Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs79871386 chr1:227435849 G/C 0 405 14.27 14.45 1.48 KM Plot
STAD rs79896696 chr1:227398558 T/G 0 404 14.27 14.23 1.48 KM Plot
STAD rs80254589 chr6:34478514 C/T 5.06E-5 395 14.25 12.8 3.5 KM Plot
STAD rs80318211 chr1:227312821 T/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs8065095 chr17:29010634 T/C 1.39E-5 399 14.23 16.02 9.8 KM Plot
STAD rs807140 chr17:51218910 G/A 3.37E-7 404 3.57 20 14.07 KM Plot
STAD rs8082537 chr17:29015932 T/C 1.6E-5 404 14.22 16.17 9.8 KM Plot
STAD rs8192629 chr1:228113046 C/T 1.15E-6 402 14.77 13.65 1.12 KM Plot
STAD rs834144 chr1:235633061 A/G 3.34E-5 398 13.27 14.67 15.88 KM Plot
STAD rs834146 chr1:235638674 T/C 3.34E-5 398 13.27 14.67 15.88 KM Plot
STAD rs857022 chr1:197007755 A/C 1.25E-7 406 5.8 17.05 14.2 KM Plot
STAD rs857027 chr1:197013464 T/C 1.66E-7 404 5.8 17.43 14.13 KM Plot
STAD rs866001 chr3:117724023 G/A 1.04E-7 403 1.93 17.92 13.97 KM Plot
STAD rs877897 chr1:197103975 G/A 1.2E-7 406 4.02 17.05 14.07 KM Plot
STAD rs880135 chr17:55186019 G/C 3.14E-7 405 14.25 15.43 5.97 KM Plot